LONG NON-CODING RNAS AS REGULATORS OF PHYSIOLOGICAL AND PATHOLOGICAL PROCESSES OF THE CARDIOVASCULAR SYSTEM
M. Khetsuriani, V. Dosenko
- Bogomoletz Institute of physiology NAS of Ukraine, Kyiv, Ukraine
DOI: https://doi.org/10.15407/fz66.04.072
Abstract
A large part of the human genome is transcribed into non-coding
RNA. This review focuses on long noncoding RNAs (lncRNAs)
involved in the regulation of gene expression. We considered
information about the molecular mechanisms of of lncRNAs
functioning, features of their interaction with miRNAs, mRNAs,
DNA and the participation of lncRNAs in physiological
and pathological processes of the cardiovascular system. In
particular, the review shows the role of lncRNAs in cardiac
cell differentiation, ischemic myocardial damage, cardiac
hypertrophy, endothelial and smooth muscle dysfunction.
Significant changes in the expression of individual lncRNAs
in cardiac pathologies allow the use of these molecules for
diagnostic purposes and as possible therapeutic targets.
Keywords:
long noncoding RNA (lncRNAs); microRNA (miRNA); noncoding genome; cardiovascular system.
References
- Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. Initial sequencing and analysis of the human genome. Nature. 2001 Feb 15;409(6822):860-921.
CrossRef
PubMed
- Comings DE. The structure and function of chromatin.Adv Hum Genet. 1972;3:237-431.
CrossRef
PubMed
- Goretti E, Wagner DR, Devaux Y. miRNAs as biomarkers of myocardial infarction: a step forward towards personalized medicine. Trends Mol Med. 2014 Dec;20(12):716-25.
CrossRef
PubMed
- Amort T, Soulière MF, Wille A, Jia XY, Fiegl H, Wörle H, et al. Long non-coding RNAs as targets for cytosine methylation. RNA Biol. 2013 Jun;10(6):1003-8.
CrossRef
PubMed PubMedCentral
- Yoon JH, Abdelmohsen K, Gorospe M. Posttranscriptional gene regulation by long noncoding RNA. J Mol Biol. 2013 Oct 9;425(19):3723-30.
CrossRef
PubMed PubMedCentral
- Pang KC, Frith MC, Mattick JS. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends Genet. 2006 Jan;22(1):1-5.
CrossRef
PubMed
- Peters AH, Kubicek S, Mechtler K, O'Sullivan RJ, Derijck AA, Perez-Burgos L, et al. Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. Mol Cell. 2003 Dec;12(6):1577-89.
CrossRef
- Czermin B, Melfi R, McCabe D, Seitz V, Imhof A, Pirrotta V. Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites. Cell. 2002 Oct 18;111(2):185-96.
CrossRef
- Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, Watt AT, et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell. 2010 Sep 24;39(6):925-38.
CrossRef
PubMed PubMedCentral
- Wang K, Liu F, Zhou LY, Long B, Yuan SM, Wang Y, et al. The long noncoding RNA CHRF regulates cardiac hypertrophy by targeting miR-489. Circ Res. 2014 Apr 25;114(9):1377-88.
CrossRef
PubMed
- Grote P, Wittler L, Hendrix D, Koch F, Währisch S, Beisaw A, et al. The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. Dev Cell. 2013 Jan 28;24(2):206-14.
CrossRef
PubMed PubMedCentral
- Li W, Notani D, Ma Q, Tanasa B, Nunez E, Chen AY, et al. Functional roles of enhancer RNAs for oestrogendependent transcriptional activation. Nature. 2013 Jun 27;498(7455):516-20.
CrossRef
PubMed PubMedCentral
- Aguilo F, Zhou MM, Walsh MJ. Long noncoding RNA, polycomb, and the ghosts haunting INK4b-ARF-INK4a expression. Cancer Res. 2011 Aug 15;71(16):5365-9.
CrossRef
PubMed PubMedCentral
- Deloukas P, Kanoni S, Willenborg C, Farrall M, Assimes TL, Thompson JR, et al. Large-scale association analysis identifies new risk loci for coronary artery disease. Nat Genet. 2013 Jan;45(1):25-33.
- Vausort M, Wagner DR, Devaux Y. Long noncoding RNAs in patients with acute myocardial infarction. Circ Res. 2014 Sep 12;115(7):668-77.
CrossRef
PubMed
- Ounzain S, Micheletti R, Beckmann T, Schroen B, Alexanian M, Pezzuto I, et al. Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs. Eur Heart J. 2015 Feb 7;36(6):353-68a.
CrossRef
PubMed PubMedCentral
- Pu M, Chen J, Tao Z, Miao L, Qi X, Wang Y, et al. Regulatory network of miRNA on its target: coordination between transcriptional and post-transcriptional regulation of gene expression. Cell Mol Life Sci. 2019 Feb;76(3):441-51.
CrossRef
PubMed
- Chan JJ, Tay Y. Noncoding RNA:RNA Regulatory Networks in Cancer. Int J Mol Sci. 2018 Apr 27;19(5):E1310.
CrossRef
PubMed PubMedCentral
- Romero-Barrios N, Legascue MF, Benhamed M, Ariel F, Crespi M. Splicing regulation by long noncoding RNAs. Nucl Acids Res. 2018 03 16;46(5):2169-84.
CrossRef
PubMed PubMedCentral
- Bacolla A, Wang G, Vasquez KM. New Perspectives on DNA and RNA Triplexes As Effectors of Biological Activity. PLoS Genet. 2015 Dec;11(12):e1005696.
CrossRef
PubMed PubMedCentral
- Nagano T, Mitchell JA, Sanz LA, Pauler FM, FergusonSmith AC, Feil R, et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science. 2008 Dec 12;322(5908):1717-20.
CrossRef
PubMed
- Zhou X, Chen J, Tang W. The molecular mechanism of HOTAIR in tumorigenesis, metastasis, and drug resistance. Acta Biochim Biophys Sin (Shanghai). 2014 Dec;46(12):1011-5.
CrossRef
PubMed
- Michalik KM, You X, Manavski Y, Doddaballapur A, Zörnig M, Braun T, et al. Long noncoding RNA MALAT1 regulates endothelial cell function and vessel growth. Circ Res. 2014 Apr 25;114(9):1389-97.
CrossRef
PubMed
- Porro A, Feuerhahn S, Delafontaine J, Riethman H, Rougemont J, Lingner J. Functional characterization of the TERRA transcriptome at damaged telomeres. Nat Commun. 2014 Oct 31;5:5379.
CrossRef
PubMed PubMedCentral
- Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G, et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature. 2011 Aug 28;477(7364):295-300.
CrossRef
PubMed PubMedCentral
- Werber M, Wittler L, Timmermann B, Grote P, Herrmann BG. The tissue-specific transcriptomic landscape of the mid-gestational mouse embryo. Development. 2014 Jun;141(11):2325-30.
CrossRef
PubMed
- Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, et al. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell. 2013 Jan 31;152(3):570-83.
CrossRef
PubMed PubMedCentral
- Ounzain S, Burdet F, Ibberson M, Pedrazzini T. Discovery and functional characterization of cardiovascular long noncoding RNAs. J Mol Cell Cardiol. 2015 Dec;89(Pt A):17-26.
CrossRef
PubMed
- Townsend N, Wilson L, Bhatnagar P, Wickramasinghe K, Rayner M, Nichols M. Cardiovascular disease in Europe: epidemiological update 2016. Eur Heart J. 2016 11 7;37(42):3232-45.
CrossRef
PubMed
- Broadbent HM, Peden JF, Lorkowski S, Goel A, Ongen H, Green F, et al. Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked SNPs in the ANRIL locus on chromosome 9p. Hum Mol Genet. 2008 Mar 15;17(6):806-14.
CrossRef
PubMed
- Holdt LM, Hoffmann S, Sass K, Langenberger D, Scholz M, Krohn K, et al. Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks. PLoS Genet. 2013;9(7):e1003588.
CrossRef
PubMed PubMedCentral
- Vausort M, Wagner DR, Devaux Y. Long noncoding RNAs in patients with acute myocardial infarction. Circ Res. 2014 Sep 12;115(7):668-77.
CrossRef
PubMed
- Zangrando J, Zhang L, Vausort M, Maskali F, Marie PY, Wagner DR, et al. Identification of candidate long noncoding RNAs in response to myocardial infarction. BMC Genomics. 2014 Jun 10;15:460.
CrossRef
PubMed PubMedCentral
- Zhang Y, Sun L, Xuan L, Pan Z, Li K, Liu S, et al. Reciprocal Changes of Circulating Long Non-Coding RNAs ZFAS1 and CDR1AS Predict Acute Myocardial Infarction. Sci Rep. 2016 Mar 1;6:22384.
CrossRef
PubMed PubMedCentral
- Wu T, Wu D, Wu Q, Zou B, Huang X, Cheng X, et al. Knockdown of Long Non-Coding RNA-ZFAS1 Protects Cardiomyocytes Against Acute Myocardial Infarction Via Anti-Apoptosis by Regulating miR-150/CRP. J Cell Biochem. 2017 10;118(10):3281-9.
CrossRef
PubMed
- Gottlieb RA, Mentzer RM. Autophagy during cardiac stress: joys and frustrations of autophagy. Annu Rev Physiol. 2010;72:45-59.
CrossRef
PubMed PubMedCentral
- Ma X, Liu H, Foyil SR, Godar RJ, Weinheimer CJ, Hill JA, et al. Impaired autophagosome clearance contributes to cardiomyocyte death in ischemia/reperfusion injury. Circulation. 2012 Jun 26;125(25):3170-81.
CrossRef
PubMed PubMedCentral
- Wang K, Liu CY, Zhou LY, Wang JX, Wang M, Zhao B, et al. APF lncRNA regulates autophagy and myocardial infarction by targeting miR-188-3p. Nat Commun. 2015 Apr 10;6:6779.
CrossRef
PubMed
- Wang K, Liu F, Zhou LY, Long B, Yuan SM, Wang Y, et al. The long noncoding RNA CHRF regulates cardiac hypertrophy by targeting miR-489. Circ Res. 2014 Apr 25;114(9):1377-88.
CrossRef
PubMed
- Wang Z, Zhang XJ, Ji YX, Zhang P, Deng KQ, Gong J, et al. The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy. Nat Med. 2016 10;22(10):1131-9.
CrossRef
PubMed PubMedCentral
- Viereck J, Kumarswamy R, Foinquinos A, Xiao K, Avramopoulos P, Kunz M, et al. Long noncoding RNA Chast promotes cardiac remodeling. Sci Transl Med. 2016 Feb 17;8(326):326ra22.
CrossRef
PubMed
- Taneike M, Yamaguchi O, Nakai A, Hikoso S, Takeda T, Mizote I, et al. Inhibition of autophagy in the heart induces age-related cardiomyopathy. Autophagy. 2010 Jul;6(5):600-6.
CrossRef
PubMed
- Jiang F, Zhou X, Huang J. Long Non-Coding RNA-ROR Mediates the Reprogramming in Cardiac Hypertrophy. PLoS ONE. 2016;11(4):e0152767.
CrossRef
PubMed PubMedCentral
- Carè A, Catalucci D, Felicetti F, Bonci D, Addario A, Gallo P, et al. MicroRNA-133 controls cardiac hypertrophy. Nat Med. 2007 May;13(5):613-8.
CrossRef
PubMed
- Zhu XH, Yuan YX, Rao SL, Wang P. LncRNA MIAT enhances cardiac hypertrophy partly through sponging miR-150. Eur Rev Med Pharmacol Sci. 2016 09;20(17):3653-60.
- Li Y, Wang J, Sun L, Zhu S. LncRNA myocardial infarction-associated transcript (MIAT) contributed to cardiac hypertrophy by regulating TLR4 via miR-93. Eur J Pharmacol. 2018 Jan 5;818:508-17.
CrossRef
PubMed
- Ha T, Li Y, Hua F, Ma J, Gao X, Kelley J, et al. Reduced cardiac hypertrophy in toll-like receptor 4-deficient mice following pressure overload. Cardiovascul Res. 2005 Nov 1;68(2):224-34.
CrossRef
PubMed
- Liu L, An X, Li Z, Song Y, Li L, Zuo S, et al. The H19 long noncoding RNA is a novel negative regulator of cardiomyocyte hypertrophy. Cardiovascul Res. 2016 07 1;111(1):56-65.
CrossRef
PubMed
- Michalik KM, You X, Manavski Y, Doddaballapur A, Zörnig M, Braun T, et al. Long noncoding RNA MALAT1 regulates endothelial cell function and vessel growth. Circ Res. 2014 Apr 25;114(9):1389-97.
CrossRef
PubMed
- Huang S, Lu W, Ge D, Meng N, Li Y, Su L, et al. A new microRNA signal pathway regulated by long noncoding RNA TGFB2-OT1 in autophagy and inflammation of vascular endothelial cells. Autophagy. 2015;11(12):2172-83.
CrossRef
PubMed PubMedCentral
- Wu G, Cai J, Han Y, Chen J, Huang ZP, Chen C, et al. LincRNA-p21 regulates neointima formation, vascular smooth muscle cell proliferation, apoptosis, and atherosclerosis by enhancing p53 activity. Circulation. 2014 Oct 21;130(17):1452-65.
CrossRef
PubMed PubMedCentral
- Lee JE, Bennett CF, Cooper TA. RNase H-mediated degradation of toxic RNA in myotonic dystrophy type 1. Proc Natl Acad Sci USA. 2012 Mar 13;109(11):4221-6.
CrossRef
PubMed PubMedCentral
- Liu JY, Yao J, Li XM, Song YC, Wang XQ, Li YJ, et al. Pathogenic role of lncRNA-MALAT1 in endothelial cell dysfunction in diabetes mellitus. Cell Death Dis. 2014 Oct 30;5:e1506.
CrossRef
PubMed PubMedCentral
- Han P, Li W, Lin CH, Yang J, Shang C, Nuernberg ST, et al. A long noncoding RNA protects the heart from pathological hypertrophy. Nature. 2014 Oct 2;514(7520):102-6.
CrossRef
PubMed PubMedCentral
- Elashoff MR, Wingrove JA, Beineke P, Daniels SE, Tingley WG, Rosenberg S, et al. Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients. BMC Med Genomics. 2011 Mar 28;4:26.
CrossRef
PubMed PubMedCentral
- Li D, Chen G, Yang J, Fan X, Gong Y, Xu G, et al. Transcriptome analysis reveals distinct patterns of long noncoding RNAs in heart and plasma of mice with heart failure. PLoS ONE. 2013;8(10):e77938.
CrossRef
PubMed PubMedCentral
- Kumarswamy R, Bauters C, Volkmann I, Maury F, Fetisch J, Holzmann A, et al. Circulating long noncoding RNA, LIPCAR, predicts survival in patients with heart failure. Circ Res. 2014 May 9;114(10):1569-75.
CrossRef
PubMed
|